Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Upf3aQ3ULJ3 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm37411-201ENSMUST00000194180 2282 ntBASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm5687-201ENSMUST00000118252 640 ntBASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm8810-201ENSMUST00000172895 754 ntBASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Upf3aQ3ULJ3 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Gm42853-201ENSMUST00000201273 1387 ntBASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Gm8213-201ENSMUST00000118191 441 ntBASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Gm10156-201ENSMUST00000122364 462 ntBASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Gm5370-201ENSMUST00000187187 574 ntBASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Upf3aQ3ULJ3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Upf3aQ3ULJ3 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms