Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gm11745-201ENSMUST00000121669 448 ntBASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col28a1Q2UY11 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col28a1Q2UY11 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.49□□□□□ -0.25
Col28a1Q2UY11 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.48□□□□□ -0.25
Col28a1Q2UY11 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms