Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sox9Q04887 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sox9Q04887 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sox9Q04887 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.28□□□□□ -0.12
Sox9Q04887 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Sox9Q04887 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Gm15370-201ENSMUST00000117158 253 ntBASIC14.28□□□□□ -0.12
Sox9Q04887 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Sox9Q04887 Gm26927-201ENSMUST00000182385 965 ntBASIC14.28□□□□□ -0.12
Sox9Q04887 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Sox9Q04887 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.28□□□□□ -0.12
Sox9Q04887 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Sox9Q04887 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Sox9Q04887 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sox9Q04887 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.27□□□□□ -0.12
Sox9Q04887 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.27□□□□□ -0.12
Sox9Q04887 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Sox9Q04887 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.27□□□□□ -0.12
Sox9Q04887 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sox9Q04887 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Sox9Q04887 Gm14263-201ENSMUST00000117955 746 ntBASIC14.27□□□□□ -0.13
Sox9Q04887 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC14.27□□□□□ -0.13
Sox9Q04887 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.27□□□□□ -0.13
Sox9Q04887 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.27□□□□□ -0.13
Sox9Q04887 Itm2b-204ENSMUST00000228637 783 ntBASIC14.27□□□□□ -0.13
Sox9Q04887 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.27□□□□□ -0.13
Sox9Q04887 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Sox9Q04887 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Sox9Q04887 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sox9Q04887 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Sox9Q04887 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Sox9Q04887 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Gm25261-201ENSMUST00000157416 134 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Mir6979-201ENSMUST00000183927 56 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.26□□□□□ -0.13
Sox9Q04887 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Gm5161-201ENSMUST00000075243 853 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.26□□□□□ -0.13
Sox9Q04887 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.26□□□□□ -0.13
Sox9Q04887 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sox9Q04887 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms