Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.97■□□□□ 0.47
Col18a1P39061 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Col18a1P39061 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC17.96■□□□□ 0.47
Col18a1P39061 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC17.96■□□□□ 0.47
Col18a1P39061 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC17.96■□□□□ 0.47
Col18a1P39061 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC17.96■□□□□ 0.47
Col18a1P39061 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col18a1P39061 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col18a1P39061 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
Col18a1P39061 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.96■□□□□ 0.47
Col18a1P39061 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC17.96■□□□□ 0.47
Col18a1P39061 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC17.96■□□□□ 0.47
Col18a1P39061 Gm6458-201ENSMUST00000211573 635 ntBASIC17.96■□□□□ 0.47
Col18a1P39061 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC17.96■□□□□ 0.47
Col18a1P39061 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC17.96■□□□□ 0.47
Col18a1P39061 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.96■□□□□ 0.47
Col18a1P39061 Gm3287-205ENSMUST00000228893 1332 ntBASIC17.96■□□□□ 0.47
Col18a1P39061 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col18a1P39061 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Col18a1P39061 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Col18a1P39061 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Col18a1P39061 Gm14704-201ENSMUST00000120300 874 ntBASIC17.95■□□□□ 0.46
Col18a1P39061 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col18a1P39061 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Col18a1P39061 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.95■□□□□ 0.46
Col18a1P39061 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Daam2-202ENSMUST00000224595 1926 ntBASIC17.95■□□□□ 0.46
Col18a1P39061 Gm7899-201ENSMUST00000192935 1897 ntBASIC17.95■□□□□ 0.46
Col18a1P39061 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col18a1P39061 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Col18a1P39061 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC17.94■□□□□ 0.46
Col18a1P39061 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC17.94■□□□□ 0.46
Col18a1P39061 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC17.94■□□□□ 0.46
Col18a1P39061 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Gm19459-201ENSMUST00000176240 835 ntBASIC17.94■□□□□ 0.46
Col18a1P39061 Gm9540-201ENSMUST00000188230 478 ntBASIC17.94■□□□□ 0.46
Col18a1P39061 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col18a1P39061 Ntng1-201ENSMUST00000051253 327 ntBASIC17.94■□□□□ 0.46
Col18a1P39061 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Col18a1P39061 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC17.93■□□□□ 0.46
Col18a1P39061 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Col18a1P39061 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC17.93■□□□□ 0.46
Col18a1P39061 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms