Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.23□□□□□ -0.29
Lire1P11260 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.23□□□□□ -0.29
Lire1P11260 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.23□□□□□ -0.29
Lire1P11260 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Lire1P11260 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.23□□□□□ -0.29
Lire1P11260 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lire1P11260 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
Lire1P11260 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Lire1P11260 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Gm9385-201ENSMUST00000117563 472 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.22□□□□□ -0.29
Lire1P11260 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.22□□□□□ -0.29
Lire1P11260 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Mir6977-201ENSMUST00000184960 64 ntBASIC13.22□□□□□ -0.29
Lire1P11260 CT025555.1-201ENSMUST00000225901 1217 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Lire1P11260 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.22□□□□□ -0.29
Lire1P11260 Gm10154-201ENSMUST00000084445 354 ntBASIC13.22□□□□□ -0.29
Lire1P11260 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Lire1P11260 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.22□□□□□ -0.29
Lire1P11260 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Lire1P11260 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lire1P11260 Gm42872-201ENSMUST00000200026 1967 ntBASIC13.21□□□□□ -0.29
Lire1P11260 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Lire1P11260 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC13.21□□□□□ -0.29
Lire1P11260 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.21□□□□□ -0.29
Lire1P11260 Gm15693-201ENSMUST00000120470 637 ntBASIC13.21□□□□□ -0.29
Lire1P11260 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Gm27622-201ENSMUST00000183779 60 ntBASIC13.21□□□□□ -0.29
Lire1P11260 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Lire1P11260 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.21□□□□□ -0.29
Lire1P11260 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Lire1P11260 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Lire1P11260 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
Lire1P11260 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Lire1P11260 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC13.21□□□□□ -0.29
Lire1P11260 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
Lire1P11260 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
Lire1P11260 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Lire1P11260 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms