Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm8337-201ENSMUST00000187358 1938 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm3287-205ENSMUST00000228893 1332 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm6254-201ENSMUST00000168178 1072 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Gm11450-201ENSMUST00000121144 333 ntBASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Scn4aQ9ER60 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Gm12165-201ENSMUST00000117047 342 ntBASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Gm43610-201ENSMUST00000199117 365 ntBASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.47■□□□□ 0.55
Scn4aQ9ER60 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Gm22058-201ENSMUST00000083393 310 ntBASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 BC037039-201ENSMUST00000192003 2205 ntBASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 AC156501.1-201ENSMUST00000228219 270 ntBASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Gm14150-201ENSMUST00000122404 1354 ntBASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Scn4aQ9ER60 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Scn4aQ9ER60 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 AC159308.2-201ENSMUST00000213592 2325 ntBASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Scn4aQ9ER60 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms