Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Smc1aQ9CU62 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Smc1aQ9CU62 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Smc1aQ9CU62 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.09
Smc1aQ9CU62 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Smc1aQ9CU62 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gm7488-201ENSMUST00000117148 684 ntBASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gm14719-201ENSMUST00000121891 340 ntBASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gm44344-201ENSMUST00000200287 129 ntBASIC15.58■□□□□ 0.08
Smc1aQ9CU62 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Gm37844-201ENSMUST00000192473 4097 ntBASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Smc1aQ9CU62 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Gm15487-201ENSMUST00000122373 465 ntBASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Gm16215-201ENSMUST00000161990 637 ntBASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Gm27533-201ENSMUST00000183800 152 ntBASIC15.57■□□□□ 0.08
Smc1aQ9CU62 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Smc1aQ9CU62 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gm27838-201ENSMUST00000184829 128 ntBASIC15.56■□□□□ 0.08
Smc1aQ9CU62 AC135669.1-201ENSMUST00000213585 412 ntBASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Syt7-205ENSMUST00000224135 1557 ntBASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Smc1aQ9CU62 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms