Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm11557-201ENSMUST00000120200 1008 ntBASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm8927-201ENSMUST00000181978 981 ntBASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm9522-201ENSMUST00000182394 926 ntBASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm29667-201ENSMUST00000190817 490 ntBASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm3222-201ENSMUST00000071282 990 ntBASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Brf1Q8CFK2 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Gm14719-201ENSMUST00000121891 340 ntBASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.77■□□□□ 0.28
Brf1Q8CFK2 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Brf1Q8CFK2 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Brf1Q8CFK2 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm13385-201ENSMUST00000121089 220 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm27838-201ENSMUST00000184829 128 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm10576-201ENSMUST00000191927 825 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Brf1Q8CFK2 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms