Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Gm5276-201ENSMUST00000196683 1047 ntBASIC19.53■□□□□ 0.72
Usp47Q8BY87 AC073947.2-201ENSMUST00000215888 1130 ntBASIC19.53■□□□□ 0.72
Usp47Q8BY87 Gm17330-201ENSMUST00000221047 165 ntBASIC19.53■□□□□ 0.72
Usp47Q8BY87 AC125117.1-201ENSMUST00000228121 468 ntBASIC19.53■□□□□ 0.72
Usp47Q8BY87 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Usp47Q8BY87 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 AC132467.2-202ENSMUST00000227726 559 ntBASIC19.52■□□□□ 0.72
Usp47Q8BY87 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Usp47Q8BY87 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp47Q8BY87 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp47Q8BY87 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Usp47Q8BY87 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp47Q8BY87 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp47Q8BY87 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp47Q8BY87 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Gm9002-201ENSMUST00000178437 499 ntBASIC19.51■□□□□ 0.71
Usp47Q8BY87 Gm7067-201ENSMUST00000207698 1249 ntBASIC19.51■□□□□ 0.71
Usp47Q8BY87 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp47Q8BY87 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gm38223-201ENSMUST00000194484 695 ntBASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp47Q8BY87 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Usp47Q8BY87 Gm12928-201ENSMUST00000117115 573 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms