Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Pif1Q80SX8 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.87□□□□□ -0.35
Pif1Q80SX8 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Gm9396-201ENSMUST00000076703 567 ntBASIC12.87□□□□□ -0.35
Pif1Q80SX8 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Pif1Q80SX8 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Pif1Q80SX8 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Efs-202ENSMUST00000227037 2540 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Mir1938-201ENSMUST00000158746 100 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.85□□□□□ -0.35
Pif1Q80SX8 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Pif1Q80SX8 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.84□□□□□ -0.35
Pif1Q80SX8 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.84□□□□□ -0.35
Pif1Q80SX8 AY702102-202ENSMUST00000194651 1173 ntBASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms