Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Gm18195-201ENSMUST00000207604 706 ntBASIC16.61■□□□□ 0.25
Rfx1P48377 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 AC154595.3-201ENSMUST00000224579 384 ntBASIC16.61■□□□□ 0.25
Rfx1P48377 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.61■□□□□ 0.25
Rfx1P48377 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC16.61■□□□□ 0.25
Rfx1P48377 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Rfx1P48377 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 AC154747.3-201ENSMUST00000224471 3470 ntBASIC16.6■□□□□ 0.25
Rfx1P48377 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Rfx1P48377 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 Gm6973-201ENSMUST00000117080 721 ntBASIC16.6■□□□□ 0.25
Rfx1P48377 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.6■□□□□ 0.25
Rfx1P48377 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.6■□□□□ 0.25
Rfx1P48377 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.6■□□□□ 0.25
Rfx1P48377 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 AC164629.2-201ENSMUST00000217916 270 ntBASIC16.6■□□□□ 0.25
Rfx1P48377 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Gm9924-202ENSMUST00000192760 2311 ntBASIC16.6■□□□□ 0.25
Rfx1P48377 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.6■□□□□ 0.25
Rfx1P48377 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Rfx1P48377 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC16.59■□□□□ 0.25
Rfx1P48377 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.59■□□□□ 0.25
Rfx1P48377 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Rfx1P48377 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC16.59■□□□□ 0.25
Rfx1P48377 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Rfx1P48377 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Rfx1P48377 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Rfx1P48377 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.59■□□□□ 0.25
Rfx1P48377 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Rfx1P48377 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Rfx1P48377 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Rfx1P48377 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Rfx1P48377 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
Rfx1P48377 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC16.58■□□□□ 0.25
Rfx1P48377 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Rfx1P48377 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Gm14140-201ENSMUST00000119999 995 ntBASIC16.58■□□□□ 0.24
Rfx1P48377 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Gm20553-201ENSMUST00000204205 844 ntBASIC16.58■□□□□ 0.24
Rfx1P48377 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC16.58■□□□□ 0.24
Rfx1P48377 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.58■□□□□ 0.24
Rfx1P48377 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC16.58■□□□□ 0.24
Rfx1P48377 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.58■□□□□ 0.24
Rfx1P48377 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.58■□□□□ 0.24
Rfx1P48377 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Rfx1P48377 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Rfx1P48377 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.58■□□□□ 0.24
Rfx1P48377 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC16.58■□□□□ 0.24
Rfx1P48377 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms