Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 Gm7003-201ENSMUST00000195089 312 ntBASIC18.01■□□□□ 0.47
Col18a1P39061 Gm44136-201ENSMUST00000203819 1106 ntBASIC18.01■□□□□ 0.47
Col18a1P39061 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Col18a1P39061 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Col18a1P39061 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Col18a1P39061 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col18a1P39061 Gm44981-201ENSMUST00000205549 1943 ntBASIC18■□□□□ 0.47
Col18a1P39061 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
Col18a1P39061 Gm37737-201ENSMUST00000195013 1638 ntBASIC18■□□□□ 0.47
Col18a1P39061 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Gm6407-201ENSMUST00000176468 549 ntBASIC18■□□□□ 0.47
Col18a1P39061 Dhrs4-202ENSMUST00000226168 828 ntBASIC18■□□□□ 0.47
Col18a1P39061 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Col18a1P39061 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Col18a1P39061 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Col18a1P39061 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Gm13045-201ENSMUST00000119019 712 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC17.99■□□□□ 0.47
Col18a1P39061 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
Col18a1P39061 Gm45691-201ENSMUST00000206905 1120 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Spcs1-203ENSMUST00000226374 592 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Col18a1P39061 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
Col18a1P39061 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC17.99■□□□□ 0.47
Col18a1P39061 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Col18a1P39061 Gm12286-201ENSMUST00000119246 1002 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Gm13408-201ENSMUST00000119822 798 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Gm13935-201ENSMUST00000121859 798 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Gm17040-202ENSMUST00000170597 889 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC17.99■□□□□ 0.47
Col18a1P39061 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC17.99■□□□□ 0.47
Col18a1P39061 AC125486.1-201ENSMUST00000218701 320 ntBASIC17.99■□□□□ 0.47
Col18a1P39061 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col18a1P39061 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.98■□□□□ 0.47
Col18a1P39061 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
Col18a1P39061 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Col18a1P39061 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC17.98■□□□□ 0.47
Col18a1P39061 Gm4993-201ENSMUST00000118719 1174 ntBASIC17.98■□□□□ 0.47
Col18a1P39061 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC17.98■□□□□ 0.47
Col18a1P39061 Gm37666-201ENSMUST00000194110 866 ntBASIC17.98■□□□□ 0.47
Col18a1P39061 Gm43058-201ENSMUST00000197645 625 ntBASIC17.98■□□□□ 0.47
Col18a1P39061 AC166051.1-201ENSMUST00000214313 210 ntBASIC17.98■□□□□ 0.47
Col18a1P39061 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Col18a1P39061 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col18a1P39061 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Col18a1P39061 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC17.98■□□□□ 0.47
Col18a1P39061 Gm37827-201ENSMUST00000194486 1542 ntBASIC17.97■□□□□ 0.47
Col18a1P39061 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col18a1P39061 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC17.97■□□□□ 0.47
Col18a1P39061 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC17.97■□□□□ 0.47
Col18a1P39061 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC17.97■□□□□ 0.47
Col18a1P39061 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
Col18a1P39061 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Gm7207-201ENSMUST00000211575 1067 ntBASIC17.97■□□□□ 0.47
Col18a1P39061 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.97■□□□□ 0.47
Col18a1P39061 AC126444.1-201ENSMUST00000225938 1768 ntBASIC17.97■□□□□ 0.47
Col18a1P39061 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col18a1P39061 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col18a1P39061 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms