Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Sdc1P18828 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm5587-201ENSMUST00000206270 674 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm6296-201ENSMUST00000222599 943 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Sdc1P18828 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm18263-201ENSMUST00000220846 1928 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC11.38□□□□□ -0.59
Sdc1P18828 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC11.37□□□□□ -0.59
Sdc1P18828 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Sdc1P18828 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC11.37□□□□□ -0.59
Sdc1P18828 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Sdc1P18828 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.37□□□□□ -0.59
Sdc1P18828 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.37□□□□□ -0.59
Sdc1P18828 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Gm10812-201ENSMUST00000099864 546 ntBASIC11.37□□□□□ -0.59
Sdc1P18828 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
Sdc1P18828 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sdc1P18828 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Sdc1P18828 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC11.37□□□□□ -0.59
Sdc1P18828 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.37□□□□□ -0.59
Sdc1P18828 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Sdc1P18828 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.36□□□□□ -0.59
Sdc1P18828 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Gm18032-201ENSMUST00000222541 538 ntBASIC11.36□□□□□ -0.59
Sdc1P18828 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Sdc1P18828 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Gm8096-201ENSMUST00000209921 1591 ntBASIC11.36□□□□□ -0.59
Sdc1P18828 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Sdc1P18828 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sdc1P18828 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms