Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 AC093926.2-201ENSMUST00000214468 1228 ntBASIC11.27□□□□□ -0.61
Cdx1P18111 Gm7787-201ENSMUST00000216858 688 ntBASIC11.27□□□□□ -0.61
Cdx1P18111 AC154621.1-201ENSMUST00000226155 1119 ntBASIC11.27□□□□□ -0.61
Cdx1P18111 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Cdx1P18111 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Cdx1P18111 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Rab3c-202ENSMUST00000223922 2398 ntBASIC11.27□□□□□ -0.61
Cdx1P18111 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Cdx1P18111 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Gm5648-201ENSMUST00000122244 1587 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Cdx1P18111 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Gm11025-201ENSMUST00000140773 466 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Gm6257-201ENSMUST00000163864 910 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Gm17271-201ENSMUST00000165535 355 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Gm45167-201ENSMUST00000208007 322 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Cdx1P18111 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Gm15500-202ENSMUST00000071641 1019 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Prkcz2-201ENSMUST00000206136 1756 ntBASIC11.26□□□□□ -0.61
Cdx1P18111 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdx1P18111 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Cdx1P18111 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx1P18111 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
Cdx1P18111 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
Cdx1P18111 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
Cdx1P18111 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Cdx1P18111 Gm15920-201ENSMUST00000118998 402 ntBASIC11.25□□□□□ -0.61
Cdx1P18111 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdx1P18111 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Cdx1P18111 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdx1P18111 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Cdx1P18111 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Celf4-206ENSMUST00000224553 1729 ntBASIC11.25□□□□□ -0.61
Cdx1P18111 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC11.25□□□□□ -0.61
Cdx1P18111 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Cdx1P18111 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx1P18111 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx1P18111 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cdx1P18111 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx1P18111 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx1P18111 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms