Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm5682-201ENSMUST00000173402 505 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm4535-201ENSMUST00000182274 558 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC11.52□□□□□ -0.57
Hmgb3O54879 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC11.52□□□□□ -0.57
Hmgb3O54879 AC147366.1-201ENSMUST00000227671 852 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm10355-201ENSMUST00000097146 517 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Gm18244-201ENSMUST00000219747 1566 ntBASIC11.52□□□□□ -0.57
Hmgb3O54879 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hmgb3O54879 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Hmgb3O54879 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Ankra2-208ENSMUST00000226100 1476 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Gm11405-201ENSMUST00000118689 1556 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 AC131743.5-201ENSMUST00000220775 1618 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Gm13418-201ENSMUST00000119097 944 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Gm7787-201ENSMUST00000216858 688 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 AC154471.1-201ENSMUST00000224418 436 ntBASIC11.51□□□□□ -0.57
Hmgb3O54879 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC11.51□□□□□ -0.57
Hmgb3O54879 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hmgb3O54879 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.5□□□□□ -0.57
Hmgb3O54879 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 AC025913.2-201ENSMUST00000220136 1766 ntBASIC11.5□□□□□ -0.57
Hmgb3O54879 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
Hmgb3O54879 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Gm13836-201ENSMUST00000121159 501 ntBASIC11.5□□□□□ -0.57
Hmgb3O54879 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC11.5□□□□□ -0.57
Hmgb3O54879 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Hmgb3O54879 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hmgb3O54879 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 125 ms