Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gm17812-201ENSMUST00000204935 318 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gm44552-201ENSMUST00000205458 1247 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Gm8325-201ENSMUST00000099086 453 ntBASIC18.53■□□□□ 0.56
Scn4aQ9ER60 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Gm6781-201ENSMUST00000038304 1242 ntBASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Scn4aQ9ER60 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Gm37737-201ENSMUST00000195013 1638 ntBASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Scn4aQ9ER60 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Gm6506-201ENSMUST00000119775 1136 ntBASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Gm6771-201ENSMUST00000182716 1001 ntBASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Scn4aQ9ER60 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 AC096628.2-201ENSMUST00000225443 1413 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm15515-201ENSMUST00000117827 822 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm17208-201ENSMUST00000168388 535 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm5732-201ENSMUST00000182596 1007 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm37827-201ENSMUST00000194486 1542 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm4081-201ENSMUST00000195287 1838 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Carlr-201ENSMUST00000181515 2574 ntBASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Scn4aQ9ER60 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm19166-201ENSMUST00000196041 1063 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Gm17889-201ENSMUST00000198410 598 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 AC113031.8-201ENSMUST00000227856 631 ntBASIC18.49■□□□□ 0.55
Scn4aQ9ER60 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Scn4aQ9ER60 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms