Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm29109-201ENSMUST00000185895 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21896-201ENSMUST00000186520 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21873-201ENSMUST00000186728 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21794-201ENSMUST00000187056 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21880-201ENSMUST00000187275 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21826-201ENSMUST00000187451 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21198-201ENSMUST00000188393 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21749-201ENSMUST00000189343 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21901-201ENSMUST00000189568 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm29424-201ENSMUST00000189716 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm28599-201ENSMUST00000189838 694 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21867-201ENSMUST00000189917 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm29269-201ENSMUST00000190087 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21722-201ENSMUST00000190153 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm28423-201ENSMUST00000190701 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21899-201ENSMUST00000190745 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21910-201ENSMUST00000191163 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21849-201ENSMUST00000191571 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm28678-201ENSMUST00000191593 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm20910-201ENSMUST00000193268 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Gm21871-201ENSMUST00000194621 696 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdc40Q9DC48 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Gm44291-201ENSMUST00000203102 2865 ntBASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cdc40Q9DC48 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Cdc40Q9DC48 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Gm12882-201ENSMUST00000121696 517 ntBASIC12.95□□□□□ -0.34
Cdc40Q9DC48 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Dupd1-202ENSMUST00000224735 548 ntBASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cdc40Q9DC48 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms