Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm15372-201ENSMUST00000120729 834 ntBASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 AA414768-201ENSMUST00000121924 1257 ntBASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm6944-201ENSMUST00000182449 1006 ntBASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm9182-201ENSMUST00000217829 639 ntBASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RTRAFQ9CQE8 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gm23634-201ENSMUST00000175071 91 ntBASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gm6728-201ENSMUST00000178117 1065 ntBASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RTRAFQ9CQE8 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms