Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Cdk5rap3Q99LM2 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gm6539-201ENSMUST00000119157 1064 ntBASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Cdk5rap3Q99LM2 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm6018-201ENSMUST00000216090 1306 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 AA543401-201ENSMUST00000164248 1269 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Cdk5rap3Q99LM2 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdk5rap3Q99LM2 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms