Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Gm9719-201ENSMUST00000162765 543 ntBASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Gm29667-201ENSMUST00000190817 490 ntBASIC15.63■□□□□ 0.09
Ushbp1Q8R370 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.63■□□□□ 0.09
Ushbp1Q8R370 AC154239.3-201ENSMUST00000226933 674 ntBASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Ushbp1Q8R370 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gm23984-201ENSMUST00000157139 203 ntBASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.62■□□□□ 0.09
Ushbp1Q8R370 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.62■□□□□ 0.09
Ushbp1Q8R370 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Ushbp1Q8R370 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Mir125a-201ENSMUST00000083545 68 ntBASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Gm6263-201ENSMUST00000120029 1342 ntBASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Ushbp1Q8R370 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Ushbp1Q8R370 Gm6912-201ENSMUST00000117218 544 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms