Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Auts2-212ENSMUST00000178555 309 ntBASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Gm10766-202ENSMUST00000194123 606 ntBASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Brf1Q8CFK2 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Mir8102-201ENSMUST00000184148 139 ntBASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Brf1Q8CFK2 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Mir7684-201ENSMUST00000183858 60 ntBASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Brf1Q8CFK2 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Gm6263-201ENSMUST00000120029 1342 ntBASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Gm4804-201ENSMUST00000182234 999 ntBASIC16.79■□□□□ 0.28
Brf1Q8CFK2 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Brf1Q8CFK2 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms