Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ccdc28bQ8CEG5 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gm13597-201ENSMUST00000121239 375 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gm10060-201ENSMUST00000212002 111 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Gm12020-201ENSMUST00000119030 2042 ntBASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ccdc28bQ8CEG5 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ccdc28bQ8CEG5 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ccdc28bQ8CEG5 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms