Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm29741-201ENSMUST00000192667 421 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Gm9463-201ENSMUST00000206707 601 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Arhgef33-210ENSMUST00000225548 456 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 n-R5s77-201ENSMUST00000083757 119 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col17a1Q07563 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Col17a1Q07563 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Gm12380-201ENSMUST00000119012 544 ntBASIC20.92■□□□□ 0.94
Col17a1Q07563 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC20.92■□□□□ 0.94
Col17a1Q07563 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC20.92■□□□□ 0.94
Col17a1Q07563 Mt1-202ENSMUST00000211807 1085 ntBASIC20.92■□□□□ 0.94
Col17a1Q07563 Gm45856-201ENSMUST00000212752 416 ntBASIC20.92■□□□□ 0.94
Col17a1Q07563 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Gm37737-201ENSMUST00000195013 1638 ntBASIC20.92■□□□□ 0.94
Col17a1Q07563 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col17a1Q07563 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.92■□□□□ 0.94
Col17a1Q07563 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm12502-201ENSMUST00000120197 444 ntBASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC20.91■□□□□ 0.94
Col17a1Q07563 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Rprl1-202ENSMUST00000198476 238 ntBASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm3793-201ENSMUST00000204973 672 ntBASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm6722-201ENSMUST00000221586 390 ntBASIC20.91■□□□□ 0.94
Col17a1Q07563 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
Col17a1Q07563 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Col17a1Q07563 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col17a1Q07563 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC20.91■□□□□ 0.94
Col17a1Q07563 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Gm15770-201ENSMUST00000117498 584 ntBASIC20.9■□□□□ 0.94
Col17a1Q07563 Gm25043-201ENSMUST00000158604 212 ntBASIC20.9■□□□□ 0.94
Col17a1Q07563 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Gm9139-201ENSMUST00000218817 700 ntBASIC20.9■□□□□ 0.94
Col17a1Q07563 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 AC113031.8-201ENSMUST00000227856 631 ntBASIC20.9■□□□□ 0.94
Col17a1Q07563 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC20.9■□□□□ 0.94
Col17a1Q07563 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col17a1Q07563 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col17a1Q07563 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col17a1Q07563 Gm15515-201ENSMUST00000117827 822 ntBASIC20.89■□□□□ 0.94
Col17a1Q07563 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Col17a1Q07563 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC20.89■□□□□ 0.94
Col17a1Q07563 Gm22138-201ENSMUST00000158748 128 ntBASIC20.89■□□□□ 0.94
Col17a1Q07563 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC20.89■□□□□ 0.94
Col17a1Q07563 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
Col17a1Q07563 Gm9111-201ENSMUST00000219394 709 ntBASIC20.89■□□□□ 0.94
Col17a1Q07563 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col17a1Q07563 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col17a1Q07563 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col17a1Q07563 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Col17a1Q07563 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Col17a1Q07563 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC20.89■□□□□ 0.93
Col17a1Q07563 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col17a1Q07563 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Col17a1Q07563 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Col17a1Q07563 Gm12899-201ENSMUST00000120565 551 ntBASIC20.88■□□□□ 0.93
Col17a1Q07563 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC20.88■□□□□ 0.93
Col17a1Q07563 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
Col17a1Q07563 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Col17a1Q07563 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Col17a1Q07563 Gm28693-202ENSMUST00000190758 331 ntBASIC20.88■□□□□ 0.93
Col17a1Q07563 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC20.88■□□□□ 0.93
Col17a1Q07563 CT009713.8-202ENSMUST00000224732 385 ntBASIC20.88■□□□□ 0.93
Col17a1Q07563 Mir483-201ENSMUST00000093631 73 ntBASIC20.88■□□□□ 0.93
Col17a1Q07563 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col17a1Q07563 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col17a1Q07563 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col17a1Q07563 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col17a1Q07563 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC20.87■□□□□ 0.93
Col17a1Q07563 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col17a1Q07563 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms