Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm13461-201ENSMUST00000120980 662 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Gm15782-201ENSMUST00000121073 445 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC14.34□□□□□ -0.11
Sox9Q04887 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm25668-201ENSMUST00000157700 129 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm2991-201ENSMUST00000173338 480 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.34□□□□□ -0.11
Sox9Q04887 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm10608-202ENSMUST00000213924 676 ntBASIC14.34□□□□□ -0.11
Sox9Q04887 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sox9Q04887 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sox9Q04887 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sox9Q04887 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sox9Q04887 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox9Q04887 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.33□□□□□ -0.11
Sox9Q04887 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Sox9Q04887 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox9Q04887 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Sox9Q04887 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Sox9Q04887 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.33□□□□□ -0.12
Sox9Q04887 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC14.33□□□□□ -0.12
Sox9Q04887 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox9Q04887 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox9Q04887 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.33□□□□□ -0.12
Sox9Q04887 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sox9Q04887 Gm42550-201ENSMUST00000201553 960 ntBASIC14.33□□□□□ -0.12
Sox9Q04887 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.33□□□□□ -0.12
Sox9Q04887 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.33□□□□□ -0.12
Sox9Q04887 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.33□□□□□ -0.12
Sox9Q04887 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sox9Q04887 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox9Q04887 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Sox9Q04887 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox9Q04887 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.32□□□□□ -0.12
Sox9Q04887 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sox9Q04887 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox9Q04887 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.32□□□□□ -0.12
Sox9Q04887 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC14.32□□□□□ -0.12
Sox9Q04887 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.32□□□□□ -0.12
Sox9Q04887 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Gm16505-201ENSMUST00000179981 232 ntBASIC14.32□□□□□ -0.12
Sox9Q04887 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.32□□□□□ -0.12
Sox9Q04887 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.32□□□□□ -0.12
Sox9Q04887 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox9Q04887 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.32□□□□□ -0.12
Sox9Q04887 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.32□□□□□ -0.12
Sox9Q04887 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms