Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lig3P97386 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lig3P97386 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.26■□□□□ 0.03
Lig3P97386 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lig3P97386 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lig3P97386 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lig3P97386 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lig3P97386 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Lig3P97386 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lig3P97386 Gm22189-201ENSMUST00000103822 86 ntBASIC15.25■□□□□ 0.03
Lig3P97386 Gm5566-201ENSMUST00000116118 459 ntBASIC15.25■□□□□ 0.03
Lig3P97386 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Lig3P97386 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Gm42612-201ENSMUST00000197986 623 ntBASIC15.25■□□□□ 0.03
Lig3P97386 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Gm43170-201ENSMUST00000199827 612 ntBASIC15.25■□□□□ 0.03
Lig3P97386 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.25■□□□□ 0.03
Lig3P97386 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Lig3P97386 CT009510.1-201ENSMUST00000227972 270 ntBASIC15.25■□□□□ 0.03
Lig3P97386 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lig3P97386 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lig3P97386 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.25■□□□□ 0.03
Lig3P97386 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lig3P97386 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Gm4875-201ENSMUST00000118257 786 ntBASIC15.24■□□□□ 0.03
Lig3P97386 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Lig3P97386 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Lig3P97386 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Lig3P97386 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Lig3P97386 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Lig3P97386 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Lig3P97386 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lig3P97386 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Lig3P97386 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Lig3P97386 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Lig3P97386 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Lig3P97386 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.23■□□□□ 0.03
Lig3P97386 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
Lig3P97386 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Lig3P97386 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms