Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Acot6-202ENSMUST00000222921 3622 ntBASIC13.37□□□□□ -0.27
Sox3P53784 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Gm12957-201ENSMUST00000117835 377 ntBASIC13.37□□□□□ -0.27
Sox3P53784 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC13.37□□□□□ -0.27
Sox3P53784 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC13.37□□□□□ -0.27
Sox3P53784 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Mir6392-201ENSMUST00000184924 108 ntBASIC13.37□□□□□ -0.27
Sox3P53784 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.37□□□□□ -0.27
Sox3P53784 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.37□□□□□ -0.27
Sox3P53784 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.37□□□□□ -0.27
Sox3P53784 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.37□□□□□ -0.27
Sox3P53784 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sox3P53784 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC13.37□□□□□ -0.27
Sox3P53784 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.37□□□□□ -0.27
Sox3P53784 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox3P53784 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Mir1247-201ENSMUST00000116706 82 ntBASIC13.36□□□□□ -0.27
Sox3P53784 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Sox3P53784 Gm21854-201ENSMUST00000179901 471 ntBASIC13.36□□□□□ -0.27
Sox3P53784 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Gm27892-201ENSMUST00000185017 106 ntBASIC13.36□□□□□ -0.27
Sox3P53784 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Gm10766-202ENSMUST00000194123 606 ntBASIC13.36□□□□□ -0.27
Sox3P53784 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Gm9257-201ENSMUST00000221254 232 ntBASIC13.36□□□□□ -0.27
Sox3P53784 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
Sox3P53784 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox3P53784 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox3P53784 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.35□□□□□ -0.27
Sox3P53784 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Sox3P53784 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Gm4984-201ENSMUST00000115987 360 ntBASIC13.35□□□□□ -0.27
Sox3P53784 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.35□□□□□ -0.27
Sox3P53784 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC13.35□□□□□ -0.27
Sox3P53784 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Sox3P53784 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.35□□□□□ -0.27
Sox3P53784 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.35□□□□□ -0.27
Sox3P53784 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.35□□□□□ -0.27
Sox3P53784 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.35□□□□□ -0.27
Sox3P53784 Gm10313-201ENSMUST00000095320 1002 ntBASIC13.35□□□□□ -0.27
Sox3P53784 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox3P53784 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms