Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Cux1P53564 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC21.09■□□□□ 0.97
Cux1P53564 Gm6621-201ENSMUST00000193251 772 ntBASIC21.09■□□□□ 0.97
Cux1P53564 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC21.09■□□□□ 0.97
Cux1P53564 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC21.09■□□□□ 0.97
Cux1P53564 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cux1P53564 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC21.08■□□□□ 0.97
Cux1P53564 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Cux1P53564 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cux1P53564 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Cux1P53564 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Cux1P53564 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Cux1P53564 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Cux1P53564 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cux1P53564 Gm45504-201ENSMUST00000211407 2107 ntBASIC21.08■□□□□ 0.96
Cux1P53564 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Cux1P53564 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Gm5896-201ENSMUST00000189662 1024 ntBASIC21.08■□□□□ 0.96
Cux1P53564 Gm8227-201ENSMUST00000223306 571 ntBASIC21.08■□□□□ 0.96
Cux1P53564 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Cux1P53564 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cux1P53564 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC21.07■□□□□ 0.96
Cux1P53564 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Cux1P53564 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC21.07■□□□□ 0.96
Cux1P53564 Gm16202-201ENSMUST00000117532 544 ntBASIC21.07■□□□□ 0.96
Cux1P53564 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC21.07■□□□□ 0.96
Cux1P53564 Gm15808-201ENSMUST00000119046 604 ntBASIC21.07■□□□□ 0.96
Cux1P53564 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC21.07■□□□□ 0.96
Cux1P53564 Gm42627-201ENSMUST00000197347 224 ntBASIC21.07■□□□□ 0.96
Cux1P53564 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC21.07■□□□□ 0.96
Cux1P53564 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC21.07■□□□□ 0.96
Cux1P53564 AC022775.2-201ENSMUST00000227885 646 ntBASIC21.07■□□□□ 0.96
Cux1P53564 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC21.07■□□□□ 0.96
Cux1P53564 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cux1P53564 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Cux1P53564 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC21.06■□□□□ 0.96
Cux1P53564 Gm2991-201ENSMUST00000173338 480 ntBASIC21.06■□□□□ 0.96
Cux1P53564 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Cux1P53564 Gm7046-201ENSMUST00000221351 977 ntBASIC21.06■□□□□ 0.96
Cux1P53564 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cux1P53564 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cux1P53564 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cux1P53564 Gm43423-201ENSMUST00000198390 2094 ntBASIC21.06■□□□□ 0.96
Cux1P53564 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Cux1P53564 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC21.06■□□□□ 0.96
Cux1P53564 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cux1P53564 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Gm8793-201ENSMUST00000183069 1303 ntBASIC21.05■□□□□ 0.96
Cux1P53564 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Cux1P53564 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Cux1P53564 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC21.05■□□□□ 0.96
Cux1P53564 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC21.05■□□□□ 0.96
Cux1P53564 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC21.05■□□□□ 0.96
Cux1P53564 AC122305.4-201ENSMUST00000216159 1206 ntBASIC21.05■□□□□ 0.96
Cux1P53564 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Cux1P53564 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Gm45760-201ENSMUST00000212190 1782 ntBASIC21.05■□□□□ 0.96
Cux1P53564 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cux1P53564 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms