Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC11.4□□□□□ -0.58
Sdc1P18828 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC11.4□□□□□ -0.58
Sdc1P18828 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC11.4□□□□□ -0.58
Sdc1P18828 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC11.4□□□□□ -0.58
Sdc1P18828 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Gm6345-202ENSMUST00000180900 204 ntBASIC11.4□□□□□ -0.58
Sdc1P18828 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
Sdc1P18828 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC11.4□□□□□ -0.58
Sdc1P18828 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC11.4□□□□□ -0.58
Sdc1P18828 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Sdc1P18828 AC115735.4-201ENSMUST00000227460 1944 ntBASIC11.4□□□□□ -0.58
Sdc1P18828 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Sdc1P18828 AC155298.2-201ENSMUST00000225485 6226 ntBASIC11.4□□□□□ -0.58
Sdc1P18828 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC11.4□□□□□ -0.58
Sdc1P18828 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC11.4□□□□□ -0.58
Sdc1P18828 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Sdc1P18828 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Sdc1P18828 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
Sdc1P18828 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Sdc1P18828 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC11.39□□□□□ -0.59
Sdc1P18828 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC11.39□□□□□ -0.59
Sdc1P18828 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC11.39□□□□□ -0.59
Sdc1P18828 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC11.39□□□□□ -0.59
Sdc1P18828 Gm27867-201ENSMUST00000184778 125 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC11.39□□□□□ -0.59
Sdc1P18828 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Sdc1P18828 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Gm10728-201ENSMUST00000194292 1829 ntBASIC11.39□□□□□ -0.59
Sdc1P18828 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC11.39□□□□□ -0.59
Sdc1P18828 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Sdc1P18828 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm13730-201ENSMUST00000121036 1462 ntBASIC11.38□□□□□ -0.59
Sdc1P18828 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sdc1P18828 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sdc1P18828 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms