Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Chmp6P0C0A3 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Chmp6P0C0A3 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Chmp6P0C0A3 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
Chmp6P0C0A3 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Auts2-212ENSMUST00000178555 309 ntBASIC15.2■□□□□ 0.02
Chmp6P0C0A3 AA619741-201ENSMUST00000195095 646 ntBASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Gm44344-201ENSMUST00000200287 129 ntBASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Chmp6P0C0A3 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm14767-201ENSMUST00000121559 586 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm20949-201ENSMUST00000206478 952 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm46209-201ENSMUST00000217912 553 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm16476-201ENSMUST00000221544 139 ntBASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Chmp6P0C0A3 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chmp6P0C0A3 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms