Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm37259-201ENSMUST00000193903 849 ntBASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm38341-201ENSMUST00000195357 515 ntBASIC16.28■□□□□ 0.2
Scn11aQ9R053 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm37922-201ENSMUST00000195596 455 ntBASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm40466-201ENSMUST00000212174 422 ntBASIC16.28■□□□□ 0.2
Scn11aQ9R053 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Scn11aQ9R053 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Gm16479-201ENSMUST00000121706 932 ntBASIC16.27■□□□□ 0.2
Scn11aQ9R053 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Ighv1-62-201ENSMUST00000193406 350 ntBASIC16.27■□□□□ 0.2
Scn11aQ9R053 Gm38266-201ENSMUST00000194931 421 ntBASIC16.27■□□□□ 0.2
Scn11aQ9R053 Gm43133-201ENSMUST00000197472 463 ntBASIC16.27■□□□□ 0.2
Scn11aQ9R053 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Scn11aQ9R053 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Scn11aQ9R053 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 AC139350.1-201ENSMUST00000227064 1594 ntBASIC16.26■□□□□ 0.19
Scn11aQ9R053 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gm38002-201ENSMUST00000193255 180 ntBASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gm8706-201ENSMUST00000197372 1491 ntBASIC16.26■□□□□ 0.19
Scn11aQ9R053 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Scn11aQ9R053 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Gm14608-201ENSMUST00000120030 1553 ntBASIC16.25■□□□□ 0.19
Scn11aQ9R053 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Scn11aQ9R053 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms