Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Gm45760-201ENSMUST00000212190 1782 ntBASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cpsf3Q9QXK7 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm12859-201ENSMUST00000117834 427 ntBASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm7063-201ENSMUST00000186840 981 ntBASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Cpsf3Q9QXK7 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Gm17795-201ENSMUST00000214505 757 ntBASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Cpsf3Q9QXK7 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Cpsf3Q9QXK7 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms