Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 AC114543.1-201ENSMUST00000226451 1558 ntBASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm18062-201ENSMUST00000208020 547 ntBASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm18055-201ENSMUST00000208254 547 ntBASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim54Q9ERP3 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Trim54Q9ERP3 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Mir692-1-201ENSMUST00000102263 109 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm11557-201ENSMUST00000120200 1008 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm13385-201ENSMUST00000121089 220 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm8927-201ENSMUST00000181978 981 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm43094-201ENSMUST00000196549 921 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm3222-201ENSMUST00000071282 990 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.08■□□□□ 0
Trim54Q9ERP3 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.08■□□□□ 0
Trim54Q9ERP3 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim54Q9ERP3 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim54Q9ERP3 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.07■□□□□ 0
Trim54Q9ERP3 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim54Q9ERP3 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim54Q9ERP3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 80.3 ms