Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Gm44855-201ENSMUST00000205725 362 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 AC154806.6-201ENSMUST00000228192 202 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Gm2423-201ENSMUST00000074863 733 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Vps28Q9D1C8 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Syt7-205ENSMUST00000224135 1557 ntBASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm15321-201ENSMUST00000121290 288 ntBASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm9522-201ENSMUST00000182394 926 ntBASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Vps28Q9D1C8 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Gm21470-201ENSMUST00000187680 696 ntBASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 AC139350.3-201ENSMUST00000226151 420 ntBASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vps28Q9D1C8 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vps28Q9D1C8 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms