Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Vps53Q8CCB4 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.27■□□□□ 0.19
Vps53Q8CCB4 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Vps53Q8CCB4 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.27■□□□□ 0.19
Vps53Q8CCB4 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Vps53Q8CCB4 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Gm12490-201ENSMUST00000120255 560 ntBASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Gm10275-202ENSMUST00000168697 495 ntBASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 AC090659.2-201ENSMUST00000225378 1186 ntBASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Gm10275-201ENSMUST00000092620 635 ntBASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Vps53Q8CCB4 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Gm4204-201ENSMUST00000110798 1231 ntBASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Gm15321-201ENSMUST00000121290 288 ntBASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Gm24694-201ENSMUST00000180054 110 ntBASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Gm27663-201ENSMUST00000184839 110 ntBASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vps53Q8CCB4 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vps53Q8CCB4 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms