Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Hmgb4Q6P8W9 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Hmgb4Q6P8W9 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm21854-201ENSMUST00000179901 471 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm18018-201ENSMUST00000198273 408 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm45384-201ENSMUST00000210451 277 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm5763-201ENSMUST00000155951 1530 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 BC001981-202ENSMUST00000191393 1545 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Gm15163-201ENSMUST00000120749 1302 ntBASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Hmgb4Q6P8W9 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm15460-201ENSMUST00000118147 391 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm15393-201ENSMUST00000120499 219 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Ighv1-25-201ENSMUST00000195638 345 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm18187-201ENSMUST00000196476 984 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 AC130829.1-201ENSMUST00000221548 494 ntBASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Hmgb4Q6P8W9 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms