Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Sh3rf1Q69ZI1 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm11543-201ENSMUST00000120758 370 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm2451-201ENSMUST00000199447 999 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gm10290-201ENSMUST00000200451 999 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sh3rf1Q69ZI1 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Olfr286-202ENSMUST00000205305 969 ntBASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 AC131743.5-201ENSMUST00000220775 1618 ntBASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sh3rf1Q69ZI1 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Sh3rf1Q69ZI1 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms