Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim28Q62318 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC18.01■□□□□ 0.47
Trim28Q62318 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Gm11425-201ENSMUST00000119608 498 ntBASIC18.01■□□□□ 0.47
Trim28Q62318 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC18.01■□□□□ 0.47
Trim28Q62318 Proscos-202ENSMUST00000178990 666 ntBASIC18.01■□□□□ 0.47
Trim28Q62318 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Gm9396-201ENSMUST00000076703 567 ntBASIC18.01■□□□□ 0.47
Trim28Q62318 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Trim28Q62318 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Trim28Q62318 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim28Q62318 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Trim28Q62318 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Gm11803-201ENSMUST00000119966 444 ntBASIC18■□□□□ 0.47
Trim28Q62318 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Gm6152-201ENSMUST00000151704 340 ntBASIC18■□□□□ 0.47
Trim28Q62318 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC18■□□□□ 0.47
Trim28Q62318 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim28Q62318 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18■□□□□ 0.47
Trim28Q62318 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim28Q62318 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim28Q62318 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Gm42872-201ENSMUST00000200026 1967 ntBASIC17.99■□□□□ 0.47
Trim28Q62318 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC17.99■□□□□ 0.47
Trim28Q62318 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trim28Q62318 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC17.99■□□□□ 0.47
Trim28Q62318 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC17.99■□□□□ 0.47
Trim28Q62318 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Gm9755-201ENSMUST00000032981 1356 ntBASIC17.99■□□□□ 0.47
Trim28Q62318 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Zscan30-202ENSMUST00000224144 1458 ntBASIC17.99■□□□□ 0.47
Trim28Q62318 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim28Q62318 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim28Q62318 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trim28Q62318 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gm4984-201ENSMUST00000115987 360 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gm10156-201ENSMUST00000122364 462 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Mir1982-201ENSMUST00000157368 74 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Gm27847-201ENSMUST00000183711 107 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Gm27375-201ENSMUST00000183799 107 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gm38671-201ENSMUST00000200573 130 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms