Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Col11a1Q61245 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col11a1Q61245 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm19163-201ENSMUST00000223313 780 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm23270-201ENSMUST00000104055 131 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm25214-201ENSMUST00000104573 129 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm13665-201ENSMUST00000120830 528 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm14277-201ENSMUST00000121195 360 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gm18584-201ENSMUST00000203098 964 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.31■□□□□ 0.04
Col11a1Q61245 AC126253.1-202ENSMUST00000226732 835 ntBASIC15.31■□□□□ 0.04
Col11a1Q61245 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col11a1Q61245 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.3■□□□□ 0.04
Col11a1Q61245 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.3■□□□□ 0.04
Col11a1Q61245 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.3■□□□□ 0.04
Col11a1Q61245 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
Col11a1Q61245 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col11a1Q61245 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Gm13316-201ENSMUST00000140537 691 ntBASIC15.29■□□□□ 0.04
Col11a1Q61245 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms