Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cln3Q61124 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.23■□□□□ 0.03
Cln3Q61124 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cln3Q61124 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cln3Q61124 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Cln3Q61124 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Cln3Q61124 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC15.22■□□□□ 0.03
Cln3Q61124 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm5940-201ENSMUST00000117582 1068 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC15.22■□□□□ 0.03
Cln3Q61124 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm2639-201ENSMUST00000156881 1297 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm7399-201ENSMUST00000032395 858 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm9823-201ENSMUST00000051212 327 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC15.22■□□□□ 0.03
Cln3Q61124 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Cln3Q61124 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.22■□□□□ 0.03
Cln3Q61124 Gm18222-201ENSMUST00000202416 1387 ntBASIC15.22■□□□□ 0.03
Cln3Q61124 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cln3Q61124 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cln3Q61124 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Cln3Q61124 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Gm12203-201ENSMUST00000118235 598 ntBASIC15.21■□□□□ 0.03
Cln3Q61124 Gm12209-201ENSMUST00000120089 596 ntBASIC15.21■□□□□ 0.03
Cln3Q61124 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC15.21■□□□□ 0.03
Cln3Q61124 Gm8584-201ENSMUST00000171982 758 ntBASIC15.21■□□□□ 0.03
Cln3Q61124 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.21■□□□□ 0.03
Cln3Q61124 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC15.21■□□□□ 0.03
Cln3Q61124 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC15.21■□□□□ 0.03
Cln3Q61124 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
Cln3Q61124 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Cln3Q61124 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cln3Q61124 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cln3Q61124 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cln3Q61124 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cln3Q61124 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC15.2■□□□□ 0.02
Cln3Q61124 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.2■□□□□ 0.02
Cln3Q61124 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Cln3Q61124 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Gm6754-201ENSMUST00000117124 913 ntBASIC15.2■□□□□ 0.02
Cln3Q61124 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cln3Q61124 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms