Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Usf1Q61069 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usf1Q61069 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usf1Q61069 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usf1Q61069 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usf1Q61069 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usf1Q61069 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Usf1Q61069 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.68□□□□□ -0.38
Usf1Q61069 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Usf1Q61069 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Usf1Q61069 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Usf1Q61069 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Usf1Q61069 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.67□□□□□ -0.38
Usf1Q61069 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC12.67□□□□□ -0.38
Usf1Q61069 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Gm8810-201ENSMUST00000172895 754 ntBASIC12.67□□□□□ -0.38
Usf1Q61069 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Usf1Q61069 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Usf1Q61069 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.67□□□□□ -0.38
Usf1Q61069 Gm9823-201ENSMUST00000051212 327 ntBASIC12.67□□□□□ -0.38
Usf1Q61069 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
Usf1Q61069 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.67□□□□□ -0.38
Usf1Q61069 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC12.67□□□□□ -0.38
Usf1Q61069 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usf1Q61069 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 BC037039-201ENSMUST00000192003 2205 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.66□□□□□ -0.38
Usf1Q61069 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.66□□□□□ -0.38
Usf1Q61069 Gm27331-201ENSMUST00000183705 60 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Gm29705-201ENSMUST00000212598 474 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 Gm19309-201ENSMUST00000218295 205 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.66□□□□□ -0.38
Usf1Q61069 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.66□□□□□ -0.38
Usf1Q61069 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Usf1Q61069 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Usf1Q61069 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Gm37305-201ENSMUST00000195714 4279 ntBASIC12.65□□□□□ -0.38
Usf1Q61069 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.65□□□□□ -0.38
Usf1Q61069 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Usf1Q61069 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms