Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col17a1Q07563 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Col17a1Q07563 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC20.98■□□□□ 0.95
Col17a1Q07563 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col17a1Q07563 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC20.97■□□□□ 0.95
Col17a1Q07563 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC20.97■□□□□ 0.95
Col17a1Q07563 Gm11354-201ENSMUST00000121974 422 ntBASIC20.97■□□□□ 0.95
Col17a1Q07563 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC20.97■□□□□ 0.95
Col17a1Q07563 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC20.97■□□□□ 0.95
Col17a1Q07563 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC20.97■□□□□ 0.95
Col17a1Q07563 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col17a1Q07563 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Gm43778-201ENSMUST00000199438 199 ntBASIC20.96■□□□□ 0.95
Col17a1Q07563 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 Hivep3-201ENSMUST00000084306 2973 ntBASIC20.96■□□□□ 0.95
Col17a1Q07563 Gm15897-201ENSMUST00000117770 1486 ntBASIC20.96■□□□□ 0.95
Col17a1Q07563 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col17a1Q07563 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Col17a1Q07563 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC20.95■□□□□ 0.94
Col17a1Q07563 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col17a1Q07563 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Gm45691-201ENSMUST00000206905 1120 ntBASIC20.95■□□□□ 0.94
Col17a1Q07563 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Col17a1Q07563 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC20.95■□□□□ 0.94
Col17a1Q07563 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
Col17a1Q07563 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col17a1Q07563 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col17a1Q07563 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC20.94■□□□□ 0.94
Col17a1Q07563 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Gm12628-201ENSMUST00000122193 382 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Col17a1Q07563 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Col17a1Q07563 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Gm14371-201ENSMUST00000138925 1518 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Gm38049-201ENSMUST00000195698 1372 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Col17a1Q07563 CT485607.1-201ENSMUST00000216100 85 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 CT010486.3-201ENSMUST00000224555 811 ntBASIC20.94■□□□□ 0.94
Col17a1Q07563 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col17a1Q07563 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Gm43352-201ENSMUST00000196419 3065 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Gm3765-201ENSMUST00000130985 1447 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Col17a1Q07563 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC20.93■□□□□ 0.94
Col17a1Q07563 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC20.93■□□□□ 0.94
Col17a1Q07563 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col17a1Q07563 Gm17208-201ENSMUST00000168388 535 ntBASIC20.93■□□□□ 0.94
Col17a1Q07563 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC20.93■□□□□ 0.94
Col17a1Q07563 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms