Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.9□□□□□ -0.5
Col8a1Q00780 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm37714-201ENSMUST00000194742 342 ntBASIC11.9□□□□□ -0.5
Col8a1Q00780 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.5
Col8a1Q00780 AC125117.1-201ENSMUST00000228121 468 ntBASIC11.9□□□□□ -0.5
Col8a1Q00780 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC11.9□□□□□ -0.5
Col8a1Q00780 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col8a1Q00780 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.51
Col8a1Q00780 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 AC174678.1-201ENSMUST00000228007 2749 ntBASIC11.89□□□□□ -0.51
Col8a1Q00780 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Gm9726-201ENSMUST00000180321 678 ntBASIC11.89□□□□□ -0.51
Col8a1Q00780 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Gm45930-201ENSMUST00000221330 292 ntBASIC11.89□□□□□ -0.51
Col8a1Q00780 AC154806.6-201ENSMUST00000228192 202 ntBASIC11.89□□□□□ -0.51
Col8a1Q00780 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Mxra8os-201ENSMUST00000097740 687 ntBASIC11.89□□□□□ -0.51
Col8a1Q00780 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC11.89□□□□□ -0.51
Col8a1Q00780 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col8a1Q00780 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm43195-201ENSMUST00000200614 2332 ntBASIC11.88□□□□□ -0.51
Col8a1Q00780 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm6283-201ENSMUST00000182369 1000 ntBASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm27514-201ENSMUST00000183692 110 ntBASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gm5276-201ENSMUST00000196683 1047 ntBASIC11.88□□□□□ -0.51
Col8a1Q00780 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC11.88□□□□□ -0.51
Col8a1Q00780 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.88□□□□□ -0.51
Col8a1Q00780 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col8a1Q00780 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Col8a1Q00780 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms