Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm17794-201ENSMUST00000220252 955 ntBASIC12.05□□□□□ -0.48
Nkx3-1P97436 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gm9899-201ENSMUST00000065519 555 ntBASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Efs-202ENSMUST00000227037 2540 ntBASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Mir1894-201ENSMUST00000122802 81 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm27839-201ENSMUST00000184242 106 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 AY702102-202ENSMUST00000194651 1173 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm43094-201ENSMUST00000196549 921 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm14451-201ENSMUST00000121581 1542 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Gm45133-201ENSMUST00000207548 2773 ntBASIC12.04□□□□□ -0.48
Nkx3-1P97436 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Nkx3-1P97436 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Mir1982-201ENSMUST00000157368 74 ntBASIC12.03□□□□□ -0.48
Nkx3-1P97436 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.03□□□□□ -0.48
Nkx3-1P97436 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.03□□□□□ -0.48
Nkx3-1P97436 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Nkx3-1P97436 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms