Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gm43570-201ENSMUST00000199951 3688 ntBASIC15.1■□□□□ 0.01
RaraP11416 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC15.1■□□□□ 0.01
RaraP11416 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.1■□□□□ 0.01
RaraP11416 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.1■□□□□ 0.01
RaraP11416 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.1■□□□□ 0.01
RaraP11416 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.1■□□□□ 0.01
RaraP11416 Gm29541-201ENSMUST00000191351 678 ntBASIC15.1■□□□□ 0.01
RaraP11416 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.1■□□□□ 0.01
RaraP11416 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gm18049-201ENSMUST00000208909 581 ntBASIC15.1■□□□□ 0.01
RaraP11416 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.1■□□□□ 0.01
RaraP11416 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
RaraP11416 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RaraP11416 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
RaraP11416 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RaraP11416 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.09■□□□□ 0.01
RaraP11416 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 AA543401-201ENSMUST00000164248 1269 ntBASIC15.09■□□□□ 0.01
RaraP11416 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.09■□□□□ 0.01
RaraP11416 Gm8000-201ENSMUST00000188378 592 ntBASIC15.09■□□□□ 0.01
RaraP11416 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.09■□□□□ 0.01
RaraP11416 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.09■□□□□ 0.01
RaraP11416 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
RaraP11416 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
RaraP11416 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RaraP11416 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RaraP11416 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
RaraP11416 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
RaraP11416 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RaraP11416 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RaraP11416 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.08■□□□□ 0
RaraP11416 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC15.08■□□□□ 0
RaraP11416 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Mir1895-201ENSMUST00000122615 79 ntBASIC15.08■□□□□ 0
RaraP11416 Gm18766-201ENSMUST00000189811 808 ntBASIC15.08■□□□□ 0
RaraP11416 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RaraP11416 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.08■□□□□ 0
RaraP11416 Mir125a-201ENSMUST00000083545 68 ntBASIC15.08■□□□□ 0
RaraP11416 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.08■□□□□ 0
RaraP11416 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
RaraP11416 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.08■□□□□ 0
RaraP11416 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RaraP11416 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms