Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC16.14■□□□□ 0.17
Col1a1P11087 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col1a1P11087 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Col1a1P11087 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Col1a1P11087 Gm6023-201ENSMUST00000118217 606 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Gm11658-201ENSMUST00000120913 1008 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Gm5637-201ENSMUST00000153890 1119 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Gm2467-201ENSMUST00000182266 1010 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Gm6981-201ENSMUST00000182467 1008 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Col1a1P11087 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC16.14■□□□□ 0.17
Col1a1P11087 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.14■□□□□ 0.17
Col1a1P11087 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
Col1a1P11087 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC16.13■□□□□ 0.17
Col1a1P11087 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.13■□□□□ 0.17
Col1a1P11087 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.13■□□□□ 0.17
Col1a1P11087 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col1a1P11087 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC16.12■□□□□ 0.17
Col1a1P11087 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 Ighv1-62-201ENSMUST00000193406 350 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC16.12■□□□□ 0.17
Col1a1P11087 Gm44064-201ENSMUST00000204964 1087 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Gm44985-201ENSMUST00000206202 1016 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Gm9176-201ENSMUST00000219955 1120 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Gm7046-201ENSMUST00000221351 977 ntBASIC16.12■□□□□ 0.17
Col1a1P11087 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.12■□□□□ 0.17
Col1a1P11087 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
Col1a1P11087 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Col1a1P11087 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col1a1P11087 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col1a1P11087 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Gm2991-201ENSMUST00000173338 480 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Gm27320-201ENSMUST00000184892 109 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Gm38158-201ENSMUST00000194617 339 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Col1a1P11087 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.11■□□□□ 0.17
Col1a1P11087 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC16.11■□□□□ 0.17
Col1a1P11087 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col1a1P11087 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC16.11■□□□□ 0.17
Col1a1P11087 Gm8227-201ENSMUST00000223306 571 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Mettl6-204ENSMUST00000227595 1027 ntBASIC16.11■□□□□ 0.17
Col1a1P11087 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col1a1P11087 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms