Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.01□□□□□ -0.01
Nr1i3O35627 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.01□□□□□ -0.01
Nr1i3O35627 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Nr1i3O35627 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nr1i3O35627 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15□□□□□ -0.01
Nr1i3O35627 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Nr1i3O35627 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Gm12428-201ENSMUST00000119844 727 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15□□□□□ -0.01
Nr1i3O35627 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Gm43474-201ENSMUST00000196415 774 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Gm18041-201ENSMUST00000218210 618 ntBASIC15□□□□□ -0.01
Nr1i3O35627 AC121804.3-201ENSMUST00000223420 295 ntBASIC15□□□□□ -0.01
Nr1i3O35627 AC154806.6-201ENSMUST00000228192 202 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15□□□□□ -0.01
Nr1i3O35627 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 AC154262.2-201ENSMUST00000224310 2293 ntBASIC15□□□□□ -0.01
Nr1i3O35627 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
Nr1i3O35627 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nr1i3O35627 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm44335-201ENSMUST00000196879 141 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm44297-201ENSMUST00000198304 141 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm44346-201ENSMUST00000198851 141 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC14.99□□□□□ -0.01
Nr1i3O35627 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nr1i3O35627 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nr1i3O35627 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms