Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Lima1Q9ERG0 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Lima1Q9ERG0 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lima1Q9ERG0 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.37■■□□□ 1.01
Lima1Q9ERG0 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lima1Q9ERG0 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lima1Q9ERG0 Gm45364-201ENSMUST00000210883 159 ntBASIC21.35■■□□□ 1.01
Lima1Q9ERG0 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lima1Q9ERG0 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Lima1Q9ERG0 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Lima1Q9ERG0 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lima1Q9ERG0 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lima1Q9ERG0 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.33■■□□□ 1.01
Lima1Q9ERG0 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.33■■□□□ 1.01
Lima1Q9ERG0 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.33■■□□□ 1
Lima1Q9ERG0 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lima1Q9ERG0 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lima1Q9ERG0 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lima1Q9ERG0 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lima1Q9ERG0 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.32■■□□□ 1
Lima1Q9ERG0 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Lima1Q9ERG0 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Lima1Q9ERG0 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.32■■□□□ 1
Lima1Q9ERG0 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Lima1Q9ERG0 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
Lima1Q9ERG0 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.31■■□□□ 1
Lima1Q9ERG0 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.31■■□□□ 1
Lima1Q9ERG0 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Lima1Q9ERG0 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.31■■□□□ 1
Lima1Q9ERG0 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.31■■□□□ 1
Lima1Q9ERG0 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lima1Q9ERG0 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
Lima1Q9ERG0 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lima1Q9ERG0 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Lima1Q9ERG0 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lima1Q9ERG0 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Lima1Q9ERG0 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lima1Q9ERG0 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Lima1Q9ERG0 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Lima1Q9ERG0 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lima1Q9ERG0 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
Lima1Q9ERG0 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lima1Q9ERG0 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.29■■□□□ 1
Lima1Q9ERG0 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.29■■□□□ 1
Lima1Q9ERG0 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lima1Q9ERG0 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.29■■□□□ 1
Lima1Q9ERG0 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lima1Q9ERG0 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lima1Q9ERG0 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.29■■□□□ 1
Lima1Q9ERG0 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Lima1Q9ERG0 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.28■■□□□ 1
Lima1Q9ERG0 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Lima1Q9ERG0 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lima1Q9ERG0 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lima1Q9ERG0 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lima1Q9ERG0 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.28■■□□□ 1
Lima1Q9ERG0 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.28■■□□□ 1
Lima1Q9ERG0 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lima1Q9ERG0 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.27■■□□□ 1
Lima1Q9ERG0 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.27■■□□□ 1
Lima1Q9ERG0 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lima1Q9ERG0 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.27■■□□□ 1
Lima1Q9ERG0 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lima1Q9ERG0 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lima1Q9ERG0 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.25■□□□□ 0.99
Lima1Q9ERG0 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lima1Q9ERG0 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Lima1Q9ERG0 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.24■□□□□ 0.99
Lima1Q9ERG0 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Lima1Q9ERG0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Lima1Q9ERG0 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lima1Q9ERG0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms