Protein–RNA interactions for Protein: Q8CI96

Clip4, CAP-Gly domain-containing linker protein 4, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip4Q8CI96 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
Clip4Q8CI96 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
Clip4Q8CI96 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Clip4Q8CI96 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Clip4Q8CI96 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Clip4Q8CI96 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.76■■□□□ 1.07
Clip4Q8CI96 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Clip4Q8CI96 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Clip4Q8CI96 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Clip4Q8CI96 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Clip4Q8CI96 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clip4Q8CI96 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clip4Q8CI96 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Clip4Q8CI96 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Clip4Q8CI96 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.73■■□□□ 1.07
Clip4Q8CI96 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.73■■□□□ 1.07
Clip4Q8CI96 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Clip4Q8CI96 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.73■■□□□ 1.07
Clip4Q8CI96 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Clip4Q8CI96 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.72■■□□□ 1.07
Clip4Q8CI96 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.72■■□□□ 1.07
Clip4Q8CI96 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Clip4Q8CI96 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Clip4Q8CI96 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Clip4Q8CI96 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Clip4Q8CI96 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.71■■□□□ 1.07
Clip4Q8CI96 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.71■■□□□ 1.07
Clip4Q8CI96 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Clip4Q8CI96 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Clip4Q8CI96 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Clip4Q8CI96 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Clip4Q8CI96 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.68■■□□□ 1.06
Clip4Q8CI96 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Clip4Q8CI96 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Clip4Q8CI96 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Clip4Q8CI96 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.67■■□□□ 1.06
Clip4Q8CI96 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.67■■□□□ 1.06
Clip4Q8CI96 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Clip4Q8CI96 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Clip4Q8CI96 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Clip4Q8CI96 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Clip4Q8CI96 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Clip4Q8CI96 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
Clip4Q8CI96 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Clip4Q8CI96 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Clip4Q8CI96 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Clip4Q8CI96 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Clip4Q8CI96 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Clip4Q8CI96 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.63■■□□□ 1.05
Clip4Q8CI96 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.63■■□□□ 1.05
Clip4Q8CI96 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Clip4Q8CI96 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Clip4Q8CI96 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.62■■□□□ 1.05
Clip4Q8CI96 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Clip4Q8CI96 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Clip4Q8CI96 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Clip4Q8CI96 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.62■■□□□ 1.05
Clip4Q8CI96 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Clip4Q8CI96 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Clip4Q8CI96 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms