Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Smarca1Q6PGB8 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Smarca1Q6PGB8 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Smarca1Q6PGB8 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Smarca1Q6PGB8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Smarca1Q6PGB8 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC24.28■■□□□ 1.48
Smarca1Q6PGB8 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Smarca1Q6PGB8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
Smarca1Q6PGB8 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC24.27■■□□□ 1.48
Smarca1Q6PGB8 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Smarca1Q6PGB8 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Smarca1Q6PGB8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Smarca1Q6PGB8 Gm28731-201ENSMUST00000185564 1569 ntBASIC24.26■■□□□ 1.47
Smarca1Q6PGB8 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Smarca1Q6PGB8 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Smarca1Q6PGB8 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Smarca1Q6PGB8 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Smarca1Q6PGB8 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Smarca1Q6PGB8 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Smarca1Q6PGB8 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Smarca1Q6PGB8 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Smarca1Q6PGB8 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
Smarca1Q6PGB8 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Smarca1Q6PGB8 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC24.23■■□□□ 1.47
Smarca1Q6PGB8 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Smarca1Q6PGB8 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Gm5921-201ENSMUST00000075898 882 ntBASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Smarca1Q6PGB8 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Smarca1Q6PGB8 Gm7199-201ENSMUST00000118327 1485 ntBASIC24.2■■□□□ 1.47
Smarca1Q6PGB8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Smarca1Q6PGB8 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Smarca1Q6PGB8 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Smarca1Q6PGB8 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Smarca1Q6PGB8 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.19■■□□□ 1.46
Smarca1Q6PGB8 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Smarca1Q6PGB8 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Smarca1Q6PGB8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Smarca1Q6PGB8 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Smarca1Q6PGB8 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Smarca1Q6PGB8 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Smarca1Q6PGB8 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Smarca1Q6PGB8 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Smarca1Q6PGB8 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Smarca1Q6PGB8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Gm26766-202ENSMUST00000227544 2347 ntBASIC24.15■■□□□ 1.46
Smarca1Q6PGB8 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Smarca1Q6PGB8 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Smarca1Q6PGB8 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Smarca1Q6PGB8 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Smarca1Q6PGB8 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Smarca1Q6PGB8 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Smarca1Q6PGB8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms