Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usf1Q61069 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usf1Q61069 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usf1Q61069 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.02■□□□□ 0.8
Usf1Q61069 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usf1Q61069 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usf1Q61069 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usf1Q61069 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Usf1Q61069 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.02■□□□□ 0.79
Usf1Q61069 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Usf1Q61069 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Usf1Q61069 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.01■□□□□ 0.79
Usf1Q61069 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usf1Q61069 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
Usf1Q61069 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20■□□□□ 0.79
Usf1Q61069 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Usf1Q61069 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usf1Q61069 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usf1Q61069 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usf1Q61069 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usf1Q61069 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Usf1Q61069 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.99■□□□□ 0.79
Usf1Q61069 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.99■□□□□ 0.79
Usf1Q61069 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usf1Q61069 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usf1Q61069 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Usf1Q61069 Gm12821-201ENSMUST00000120022 600 ntBASIC19.98■□□□□ 0.79
Usf1Q61069 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usf1Q61069 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usf1Q61069 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.98■□□□□ 0.79
Usf1Q61069 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usf1Q61069 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usf1Q61069 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.98■□□□□ 0.79
Usf1Q61069 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usf1Q61069 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usf1Q61069 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usf1Q61069 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Usf1Q61069 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Usf1Q61069 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usf1Q61069 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Usf1Q61069 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Usf1Q61069 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usf1Q61069 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usf1Q61069 Gm10399-202ENSMUST00000202768 748 ntBASIC19.95■□□□□ 0.78
Usf1Q61069 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.95■□□□□ 0.78
Usf1Q61069 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usf1Q61069 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usf1Q61069 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usf1Q61069 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Usf1Q61069 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.94■□□□□ 0.78
Usf1Q61069 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usf1Q61069 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
Usf1Q61069 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Usf1Q61069 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usf1Q61069 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usf1Q61069 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.93■□□□□ 0.78
Usf1Q61069 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.93■□□□□ 0.78
Usf1Q61069 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usf1Q61069 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Usf1Q61069 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usf1Q61069 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usf1Q61069 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Usf1Q61069 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usf1Q61069 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usf1Q61069 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usf1Q61069 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.92■□□□□ 0.78
Usf1Q61069 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usf1Q61069 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usf1Q61069 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.91■□□□□ 0.78
Usf1Q61069 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usf1Q61069 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Usf1Q61069 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usf1Q61069 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.9■□□□□ 0.78
Usf1Q61069 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usf1Q61069 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usf1Q61069 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usf1Q61069 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usf1Q61069 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.9■□□□□ 0.78
Usf1Q61069 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usf1Q61069 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usf1Q61069 Gm27454-201ENSMUST00000185090 204 ntBASIC19.89■□□□□ 0.77
Usf1Q61069 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usf1Q61069 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.88■□□□□ 0.77
Usf1Q61069 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usf1Q61069 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usf1Q61069 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usf1Q61069 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usf1Q61069 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usf1Q61069 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms